Genomics of Caddisfly (Insecta: Trichoptera)...
URL: https://doi.org/10.1002/ece3.73327
Data Availability Statement for "Heckenhauer, J., C.Gerheim, G.Jijon, S. U.Pauls, R. W.Wisseman, and P. B.Frandsen. 2026. “Genomics of Caddisfly (Insecta: Trichoptera) Species Associated With Terrestrial Habitats.” Ecology and Evolution16, no. 4: e73327. https://doi.org/10.1002/ece3.73327":
Sample information (E. pusilla: SAMN49671951; P. rivularis: SAMN49671952), raw PacBio HiFi sequencing reads (E. pusilla: SRR36479557; P. rivularis: SRR36482349), and primary assemblies (E. pusilla: JBPQUU000000000; P. rivularis: JBPQUV000000000) have been uploaded to the National Center for Biotechnology Information (NCBI, https://www.ncbi.nlm.nih.gov/). Sequences of primary and alternate h-fibroins have been uploaded to GenBank (https://www.ncbi.nlm.nih.gov/genbank/) at PX673985 and PX673986 (E. pusilla) and PX673987 and PX673988 (P. rivularis). Alternate genome assemblies, functional and structural annotations of the genomes, mitogenomes, repeat annotations and files relevant for phylogenetic inferences are found at: https://figshare.com/s/732ad6f0f7c6a0fa0f74 (10.6084/m9.figshare.30834434).
Appendix S1: Repetitive DNA content in Limnephilidae: https://onlinelibrary.wiley.com/action/downloadSupplement?doi=10.1002%2Fece3.73327&file=ece373327-sup-0001-AppendixS1.xlsx
Appendix S2: Amino acid composition of the major silk gene h-fibroin: https://onlinelibrary.wiley.com/action/downloadSupplement?doi=10.1002%2Fece3.73327&file=ece373327-sup-0002-AppendixS2.xlsx
Supplementary Material: https://onlinelibrary.wiley.com/action/downloadSupplement?doi=10.1002%2Fece3.73327&file=ece373327-sup-0003-Supinfo.pdf
Table S1: Software tools and commands used to perform analyses of this study. All files are available at National Center for Biotechnology Information (NCBI, https://www.ncbi.nlm.nih.gov/) or at https://figshare.com/s/732ad6f0f7c6a0fa0f74. Table S2: Blast hit table. Primary and alternate assemblies were blasted against termini of the h-fibroin of Hesperophylax occidentalis to identify the h-fibroin in the respective assemblies. Figure S1: Genomescope Profile of kmers derived from HiFi reads (Enoicyla pusilla). Figure S2: Genomescope Profile of kmers derived from HiFi reads (Philocasca rivularis). Figure S3: Repeat landscape plot, where the x axis indicates divergence from consensus in Kimura distance, and the y axis indicates the percentage of the genome annotated as TE for each level of divergence. Ancient activity (greater divergence to consensus) appears on the left-hand side, while more recent activity is shown towards the right (greater similarity to consensus). Note S1: Schematic representation of the h-fibroin of Enoicyla pusilla. Note S2: Schematic representation of the h-fibroin of Philocasca rivularis.
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| Field | Value |
|---|---|
| Data last updated | unknown |
| Metadata last updated | April 21, 2026 |
| Created | unknown |
| Format | unknown |
| License | License Not Specified |
| Created | 1 week ago |
| Id | 0849bf54-b254-41cb-a70d-b2fcdd637c9d |
| Package id | 3b63501c-382f-4247-89b7-6ff2218ae6c4 |
| Restricted level | public |
| State | active |